NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0008165

Scaffold Ga0334980_0008165


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0008165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4606
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F024063Metagenome207N
F083918Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0008165_1203_1370F083918GGAMMGFVEIIDGSGYLARLENDQVTIEPTDDKCMACNDDRLIHDGNYLVCTQCHCRQ
Ga0334980_0008165_2270_2500F024063AGGMPVPQNMCAQIGLQMTMEIAVYLFIGLSMAYWLVLMRIDDMKQTHYWRGRKDGWDMHRRMIQNKVKTDEVFDYDKN
Ga0334980_0008165_935_1189F000141AGGAMHTRFKCNGCKRDTEFLWLDQLDTPEGFKAYQCMDCGCVGVKNVVEALHIPDSDICRCDKCGSWKFETVVCHTCLILETKDANV
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