NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0012519

Scaffold Ga0334980_0012519


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0012519 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3674
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0012519_1261_1530F003714N/AMPNAHHPYTETLTFAGRVIPLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRTWLDLTGTTWVNLNRRGPYKTRNK
Ga0334980_0012519_2115_2378F003583GGCGGMTVLAGVSAFASAYVAGYVLEQLQSTEALALIVTDAGLKSDSADLERNMSTATLALKSVRDLGWSLAVGCLGVGVAVFLRARRQNAS
Ga0334980_0012519_2401_2778F001923N/AVSPPPPIDPESIPKELKDGIVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQEHIQSPGLRMGVIGAAGYAAPECLDYLMRYIKARGQKEVDGVTATKSNAKSKATASKRKR
Ga0334980_0012519_333_617F000957N/AMSSFQHLDGMVALLSEVFEINERILTGDICSNKTAIASTRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
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