NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0015372

Scaffold Ga0334980_0015372


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0015372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3295
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004474Metagenome / Metatranscriptome436Y
F023586Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0015372_2820_3293F004474GAGMNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHVQPALGTPLYKALLNRVETSTWTQDYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKAVGRVQDDNLQPNSDSEQAAFRDQLRKDAFFYKERLIGYLMDDQGVKYPEYIEGCDDLTCNENVK
Ga0334980_0015372_3_284F023586N/AMILASDTKELRSEIHLLAQNEVVCIVEKASGEYVALGFGEGLQIADGSAYGSGTVKSDRNGHDLVLTGMENDEVPDVDATVVATLLTQQSPSI
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