NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0019641

Scaffold Ga0334980_0019641


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0019641 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2904
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014121Metagenome / Metatranscriptome265Y
F017818Metagenome / Metatranscriptome238Y
F018913Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0019641_2042_2284F017818N/AMNKEAYYDWIDENDSYPEHSHKWIVGLYNKYEGVEALHRYFGVFETKEEAKEFAADYKDKYTKAGFISSVRVFPLCEVVK
Ga0334980_0019641_702_911F014121N/AMMTNTAYQIWETFKAELIVEPTDDMKQALASSIRVISSLIHRDGVLANEPWLTHTAQELNEIADDVEAL
Ga0334980_0019641_908_1132F018913GAGMTNQERAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGTNKVDFTDELDVMFNAGWDECLKEIDAICDELLEL
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