NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0026583

Scaffold Ga0334980_0026583


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0026583 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2474
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015587Metagenome253Y
F055679Metagenome / Metatranscriptome138Y
F087065Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0026583_1021_1323F055679AGGMELSMDLTTGWKQHTNVPGGYHLVYVDALVGEISVVTGPQGSGLMASNNPGQEPTYEVWFPSMRNPTGHLTLDEIKGIIKYMRQCEEERIWTACSEYEND
Ga0334980_0026583_1878_2066F015587N/AMTALNIRKNTAGLLKIAASAVENAKVPTKTQASNALHDIRCRAAALMMPNDMAFVITPKTNI
Ga0334980_0026583_249_530F087065N/AMETNAIRRWQYDWRLNAGERPTEQNAELFHSYVEMAYTLLEEFSSAEFMYHEVRRVCSPKYLFSVVCDMRGEKLSMRIYNTDSGIKAISIHKV
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