NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0029017

Scaffold Ga0334980_0029017


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0029017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2363
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F055677Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0029017_2_403F055677AGGMKEMINQEKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYIIMKCIITKCDPEHIIATGYSKQYRDKAGYLEIAETFAITRALSFMGILLEDVTSKEEYEDLEIPVQPVNTK
Ga0334980_0029017_461_667F013409N/AMKIILTIIMMNGTIYNLGYEIDSYSPRICDKLFDKITYVGKASGKNKVGTFYKSKEVFAHSCSYEKKA
Ga0334980_0029017_664_837F011150GGAMDINYYHKQHEKIKQQFRHDIIMQKLKEKEDREYKNMFIKLLLIFVIAVLLITLIAR
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