NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0127453

Scaffold Ga0334980_0127453


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0127453 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052374Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0127453_124_1050F052374AGAAGGVPDRDNTLKVLPAPEARSLRSRENEAAQQFKYVEDLCAELELAVLEGNVREVKCQRRALTSGLRQAEEAIVRTAEAHKWTKAELDRALDDVRGHALPHKELADEFLHAEEQEKRGQWIHECQKMTQNAINLASQATRALTIGDWSRQDCEEFLDDLEKEFKKVNKELDTYPLMDCEPGVKRKMADCRLRLEAARYEAEKVVTRLLRDHDAWGQVSREGRPREKVPETRAELRSRRDDGEPMEKALPVRFEGLQLEKDSTGAGGPEEERSRSSRGVQEERPTTSTPVGSDIEQRRKRSPEGISGIRDVHL
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