NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0154464

Scaffold Ga0334980_0154464


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0154464 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010915Metagenome / Metatranscriptome297Y
F033034Metagenome / Metatranscriptome178Y
F037694Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0154464_152_313F037694N/AMLNKEQAFVVNEFIRKNATRNLWEVSDKLYTLISEIKKLEELPQNNETQIAAA
Ga0334980_0154464_315_449F010915N/AMIVVVQIGLDLYSLSYVKYMDHDVVQYVKHDLNAEDIAQFLGNN
Ga0334980_0154464_458_772F033034N/AMKVAKLTKKAQDIVNQIMSADAADIDHGRVDERVYYGQMHLTGEGLECNVNVDGDMGELIISNESLNAAVVSDGIIEIDGEYIPNNEFGDMTITLYKLSKIAAL
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