NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0199684

Scaffold Ga0334980_0199684


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0199684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)802
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004443Metagenome / Metatranscriptome437Y
F050160Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0199684_2_346F050160N/AVKSKENLKTMTKIDEAKIIARDDEVKAIGKTAEEFRASIEKQIDRGIETKALITLPHPSATISYIPILTFTSFICIFSILNSFVADPLDHHFQTFTIGDLSDCKLRHLSRQTAST
Ga0334980_0199684_441_800F004443N/ASIGAALHLATGLRRSKRAPSVYPFEITDLLDYEARKKHSQNKILGEKIAKILHQNTDFADEIAANNQTPSEKLKKDPIMALVTKTVSTYMLVKHSKNAKELYNKENLSPWGEPFFKKKE
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