NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334828_044173

Scaffold Ga0334828_044173


Overview

Basic Information
Taxon OID3300033822 Open in IMG/M
Scaffold IDGa0334828_044173 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1254
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015327Metagenome / Metatranscriptome255Y
F015623Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0334828_044173_1087_1254F015623N/ALEPDGTSKIDLAGFADNACGKVMDDFRGGDRVLSERRKPEYYNHGRSQQPQQGNQ
Ga0334828_044173_1_429F015327GGAGGMEPNALVECANELISALKEELAESGTVTPAFILLHERDCEILTFSPRLFASAEGKAAVSRAFRNRARQTGAHGALVGLDSNCFIPDLTAMSEANPRLVQAAAGAGIDALVRSGFGRKSEGLSVTLQTPAFHLLVQQLYSRGDN
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