NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334837_008932

Scaffold Ga0334837_008932


Overview

Basic Information
Taxon OID3300033823 Open in IMG/M
Scaffold IDGa0334837_008932 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4733
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3531Long. (o)19.0476Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028442Metagenome / Metatranscriptome191Y
F037826Metagenome / Metatranscriptome167Y
F094600Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334837_008932_1226_1423F037826GGAGGMTLHPLFVAGVLEGFEGTLGEMVGRVENQELNTRLDALRGQVEALRINIEEPLRQAEADRTPLEI
Ga0334837_008932_2_250F094600N/ARLVQAATSAGIDALVRSGFGKKSEGISVTLQTPRFDLLVQQLYARGDNSIVFGELRTLDSREVPMEAAGLFSIYGGQHVARG
Ga0334837_008932_3836_4060F028442AGGAGGMVMTLEEALADIKRLGGGLAIPPVAQQEVSCHDTEQVVRFLAEAYEHLRKRDHLYADRRRSAFLAPPPASVPPD
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