NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334837_024350

Scaffold Ga0334837_024350


Overview

Basic Information
Taxon OID3300033823 Open in IMG/M
Scaffold IDGa0334837_024350 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3531Long. (o)19.0476Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040984Metagenome160N
F096456Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334837_024350_1238_2017F096456N/AMNHPEGQEIAPEDFHERYHAAKAWYRKMHEDERLIVVDPSILPSDLGCLKSWVQDLRKKFPDHALLVVGDNFHLYSLVTNETGEGYIRAMSRFINEEIVAANRTTALFTMEIPKEQLRPGSRPTYLNLKGSAGLSFDAKANCGVYNQLQDWCDVPSNVDVWWESSEWMETVTNPDGVQARVAIRKPIIEVIIDKNKITGTKGTIFYRLEDKSGQMVECSDREQQQYRTRLVEAAATRDKADKSARGTLAGSRAAYRSKL
Ga0334837_024350_771_1172F040984AGGAGMSTRNYKVEFDPTFFGGTYTGHGNHALIPEQLVEEVGMSAAFLKTTGHNPANIVHFAEDLRFDSKGLLCTDEPAIDTSTDSTVELPAEGTVQIPADESIQFPEPTVIEIGDQPVQIETESQDVPRLSRRKQAA
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