Basic Information | |
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Taxon OID | 3300033830 Open in IMG/M |
Scaffold ID | Ga0326764_000074 Open in IMG/M |
Source Dataset Name | Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38312 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.7265 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F101502 | Metagenome | 102 | N |
F105516 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326764_000074_8096_8419 | F101502 | N/A | MSQVSKAPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPAYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRALITPLARLTP |
Ga0326764_000074_8471_8854 | F105516 | AGG | MPKALVRVLALGRVSLNFKTFRVIENERVSITDDGAVKCLGGDCSANGVFITLEADRPNAGELFEALRRVRVLEFEVEIHGLPGWLLSRLEFLTGEPINSDAKVKYTWRSMPSLEELALVLNDLNLY |
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