Scaffold Ga0326764_000947

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326764_000947

Scaffold Ga0326764_000947

Overview

Basic Information
Taxon OID	3300033830 Open in IMG/M
Scaffold ID	Ga0326764_000947 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7826
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.7265	Long. (^o)	-110.709	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_000947_2966_3241	F056742	N/A	MFIIEVEKVYGVKVKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYACVKCNSVLTAEESITHTLKHMKQLGYNPLAYNENI
Ga0326764_000947_4602_4913	F077502	GAG	MVNQVTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFESVREIADAFKEMVYRSIEQSIGVLTEDVKEQVDAYFFKKLSEIYSKYYE
Ga0326764_000947_4923_5291	F070317	N/A	MPTLEEIKELNLEKIVKDAQEGEVCVVEKILKGKLTDLIPLVRDPANLSQNAIEFIQRRGNDIFYLFQCATREGRNVKLLVRQSFDPKSTFYRLMKKYHTIKVGDEIVVFYNPEKRRYDFLL

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