Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_000722 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20654
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (65.52%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20654

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (65.52%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025421	Metagenome / Metatranscriptome	201	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F038570	Metagenome / Metatranscriptome	165	N
F059420	Metagenome	134	Y
F079295	Metagenome	116	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_000722_10547_11164	F031690	AGGAG	MNPNTYPKNLLYCASFDVIVGTERSRLYLLASNAEQAAKYVWPTKTRKKARYVVSCERLAGLQSAEEIENVALLYGFKHNHPHICEVMERHKSLASVIIETWTLRWALSLLQDDDAAKTVTINDKGLSIQGVTLGGIALYSAEMLVRSRPLRLAFEQMPHDETAQVDILGRRHARALKISLGAETHYVFDYRNGFTAWITKGNEE
Ga0308413_000722_11161_11445	F029920	N/A	LSERFKQNARSIAPGLAFSYQPREYLAIGRIERQPDADDIAQVVALAREAFIFLAREPQHEVIELNGITWHLARWLLKRESVADHLPQSKRRNR
Ga0308413_000722_14140_15201	F028964	N/A	MIGAEAILALTSLRNPGTRTSALALSGSFERRAMEVAECELEIRAHTPSYDLSAYGDVLMVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIESVPVHAGGVNFRDYWIITPDNVPPSVDVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAVKDAAGNYGVEPSIALVFAHGLPRNGLFRPRWGGSIKYEAWVYDRTQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQETPRLGDQVFLVAGDNQRCAGIAHVVSERYTVTGGQVSSAEVGVVKI
Ga0308413_000722_15188_16954	F059420	AGGAGG	MEIELAYGPLNLNTIQLHYYNVPGQYSWVLRDFQGDLIDEVEVLTREALGGRTLIAGQQGRARRIVIVLDVQGTSMQNLHLAIRRLEQQVRFRKTQVPLELLVKSPVTGLWNQMVVILEQMSAQFEDDQYRATVTMRFACRRVYWIEPIIPTVSASNSTLTSNAFVVDLSTMAFTPITGVGPIINIDYRDASNEWILFSVSQVWRAPATGGAAALIGSVSGATILRGCVAHDGSIIAIAQGVNQLVRFTYPSSSPTVLGNFNGTPARVRRFWDSYFSVGEFSQYQTTSGLAGMVTTDVNGNITNTFSPFPTSVVFPGGGRIRDVLIKDNIGVAIAYRAPSPSQSWVAVWSGQVAPYYVAEGASTWSPFEIDQSSPIDDVTICAESWIHSGRTFNTLCRLRNLSSVVPYAYPTASVGGVQDGCAVERFFFATSEPRKVFRLGDDGTAMPLFTSNQNSIAIRRVGNLMCIGYLNAAIVWTPLTVNVNPLLNDGTTAEIVPTLGGIDFKVFSFYSKVDTEILGEVIDPQYTNINYEPKYHTGGSFTPLPGTRYEKAFLGSEDFNIDRYWFAVDRSVPSFNVGLIKYKHDWR
Ga0308413_000722_19246_19476	F025421	N/A	MINLSKVRRIDRSAPGSFMEYARLQAAITEGDLMAIARALESYGVNLQELSFNELTDVIKHIAGEPTPLGDTSATA
Ga0308413_000722_19473_20336	F038570	N/A	VKDGSVTINHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQIYTIEYGTTGAEYRVVGGLLKEWTLRYEANAGVTESWAFIGRSVQANALTGSLPTRIVTPVLSRHASWFVDNIGSPHGATEAFQTVIEAELSINTNRHLKMFEGSQPITWGEGRWEAQLSMTVEFNSTAKAWVDALITNRVARNIRVEFVESPTIRELRIDFVGLLAEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRVVNGVATLP
Ga0308413_000722_8831_9292	F079295	AGG	LTPQNKKEKKEREGARSSRAPASSSENQNNKMRDYLDHVLARLEGQDPAERIIRAWSLPPHLEAQCLSFARVFEVMPTKADKARWAKAAETLHELRCDEARLKAAREEASKAGLTCTWPGAVINLKAIRSIQQEYELVYDEERGGYVRKQKRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_000722

Overview

Ecosystem & Geography

Associated Families

Sequences