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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033886 Open in IMG/M |
| Scaffold ID | Ga0308413_001715 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11965 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002229 | Metagenome / Metatranscriptome | 580 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002978 | Metagenome / Metatranscriptome | 516 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F007172 | Metagenome / Metatranscriptome | 356 | Y |
| F008135 | Metagenome / Metatranscriptome | 338 | Y |
| F012676 | Metagenome / Metatranscriptome | 278 | Y |
| F015735 | Metagenome / Metatranscriptome | 252 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308413_001715_267_560 | F012676 | N/A | MAPELPAMVKSSVGKEGAMTSIKLAAGWDGSTKALTHPEHEWIRFLETRGIAYATYLDEPPGWRIVVCDERRFTQLIPILQKYGVYGTHTWTYDIHP |
| Ga0308413_001715_4249_4602 | F000855 | GAGG | MDWLEDFWSKIVSWFDELSAGVHNGIVEWINSLVSIWNGWMDALMHPAQAMPSVPELRWIVDWLGDIADYTRLMYMLVDYVAYASVVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS |
| Ga0308413_001715_4605_4769 | F001381 | GAG | MHYVIATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRSWLTAAGGDD |
| Ga0308413_001715_4963_5418 | F000642 | N/A | MQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLHDDLGGWRVLSAVYGDAGVVADGVTYPASLPAVRAGRELIWIARCESAALIEHQALERARESAALSSLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK |
| Ga0308413_001715_521_763 | F007172 | AGGAGG | MTTPTALTALQRRAFAAALRAAKNNAYCRTVGGFVIARLSDGTIDWFPLGQPPHRGGEPDRNAVILGKWRRNYRRWSRVA |
| Ga0308413_001715_5442_5660 | F002978 | N/A | MLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAVATLRAAGADCSALPASLPGTPPGAPGTSGA |
| Ga0308413_001715_6329_6634 | F004024 | AGGA | MPSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPLIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRER |
| Ga0308413_001715_7322_7660 | F002229 | GAGG | MVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGAGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRALCGGCGGCVDDDDGGDEE |
| Ga0308413_001715_7670_7909 | F008135 | AGGAGG | MRAVIDPRTERVLTEAGAGIARVLDARRRHAVVLAVDVVWYIVAALPPDGSVTFGDVVRLLRWFARGFSEGVEVDDGDE |
| Ga0308413_001715_8171_8485 | F002372 | AGGGGG | MPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV |
| Ga0308413_001715_8488_8898 | F015735 | AGGCGG | MMVYHHWSVEWHPRDIDPPGGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGPGYEVVWRLSVVAGDADGDAPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRASPGYFGLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |