NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_001715

Scaffold Ga0308413_001715


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_001715 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11965
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y
F008135Metagenome / Metatranscriptome338Y
F012676Metagenome / Metatranscriptome278Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_001715_267_560F012676N/AMAPELPAMVKSSVGKEGAMTSIKLAAGWDGSTKALTHPEHEWIRFLETRGIAYATYLDEPPGWRIVVCDERRFTQLIPILQKYGVYGTHTWTYDIHP
Ga0308413_001715_4249_4602F000855GAGGMDWLEDFWSKIVSWFDELSAGVHNGIVEWINSLVSIWNGWMDALMHPAQAMPSVPELRWIVDWLGDIADYTRLMYMLVDYVAYASVVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308413_001715_4605_4769F001381GAGMHYVIATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRSWLTAAGGDD
Ga0308413_001715_4963_5418F000642N/AMQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLHDDLGGWRVLSAVYGDAGVVADGVTYPASLPAVRAGRELIWIARCESAALIEHQALERARESAALSSLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
Ga0308413_001715_521_763F007172AGGAGGMTTPTALTALQRRAFAAALRAAKNNAYCRTVGGFVIARLSDGTIDWFPLGQPPHRGGEPDRNAVILGKWRRNYRRWSRVA
Ga0308413_001715_5442_5660F002978N/AMLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAVATLRAAGADCSALPASLPGTPPGAPGTSGA
Ga0308413_001715_6329_6634F004024AGGAMPSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPLIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRER
Ga0308413_001715_7322_7660F002229GAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGAGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRALCGGCGGCVDDDDGGDEE
Ga0308413_001715_7670_7909F008135AGGAGGMRAVIDPRTERVLTEAGAGIARVLDARRRHAVVLAVDVVWYIVAALPPDGSVTFGDVVRLLRWFARGFSEGVEVDDGDE
Ga0308413_001715_8171_8485F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV
Ga0308413_001715_8488_8898F015735AGGCGGMMVYHHWSVEWHPRDIDPPGGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGPGYEVVWRLSVVAGDADGDAPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRASPGYFGLE

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