Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_002835 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8577
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8577

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004170	Metagenome / Metatranscriptome	450	Y
F009196	Metagenome / Metatranscriptome	321	Y
F015185	Metagenome / Metatranscriptome	256	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_002835_3119_4882	F004170	GGAGG	MSDPSLFVSPLVRQAARNLRTVEWLSENNTWRSDSLYRWNFWRTRRMMAMTPDEAAAWLPAVAVTVQRETWKPVLEELTHWPLPEPLPPEAIPWRNALIQSWEQHPTAKDWNPPATTWGKTLRLAALVRLDRRAERLPEWLAEARRAMDLEWYHWHFRLAALAGWRPRPSDRPPHTGSTEVAHGTDSTGAAPAWIRFWEERYRTPGSELDGLIAAAALLHLAETGWLPSGPSPKRLREEFHQWMQQWSVSTYEDMEILRILLSSVPADASAPEQRQQNIMAWLELTHENVRWEKRELVWEMLAAWQREGILQRCGGGRGRLRDGGRLQKLSLLPDLARTLEWEQDMDVLQAMVGYVPDAAEVSAYQEAARAVIARWEALSRSDNGRIRQIAWVARWNFLRAGALNAEEQGRFGADYVEAIGSEDDRELLALAQITPPGTFPLAIWTRRLSDQDDRCRLAARLAIHGWLVDMAGSGQRRQVRQALRRAGQEGTDAGTVAPFVNLPPEVWTDFRRLREIETALAAGQMPPPPDAGKGKRKRMGYLATLARLPEAHPRTDPPGITDRTTGRTAGSDPQARHPFLEVIRHE
Ga0308413_002835_3_1364	F015185	GGAGG	MNDPSLFASRLVRQAARNLHTVEWLSENNTWSSDSSCRWNFWRTRRMMARTPDEAAAWLPALAFAVSREKDPYVLAEFVRWTLPEPLPPEALPWRDRLIQGWEQYPADTNWEKTVRLGALVRLDRRAERLPECLREARRALELKPEDRRLRLAALAGWRPRPDDGPPYGDKAEAAQAWVRFWEKRYRTPGSKLDGLIAAVALLHLAEAGWLLSGPCPERLREEFCQRVQQRFIRTYWDANILRILLSSVPADASAPERRQQDIMAWLELTHENVRWEKREAVWDMLAAWQREGVLERCGIDREQLQELSLLPALAQTLEWEQDGEVLQAMAGYVPVLAEVRAHPEATRDIVARWEALSWNGNWRIRRDAWVARWNLLRAGALTAEEQARFGADDVKAIGSENDRDVLLALARITPPGTFPLAIWTRRLSDKDDRCRLVARLAIHGWLVDMAGGG
Ga0308413_002835_4875_6629	F004170	GGAGG	MSDPSLFASPLARQAARNLRTVECLSENDTWRSAWLCRRDFWHTRRMMARTPDEAAAWLPAMAFAVSCEKDADVLAESAWWTLPEPLPQEALPWRDRLIQVWEQYPADTTWEKTIRLSALVRLDRRVERLPEWLREACRALDLVWYGRHLRLAALAGWRPRPGDEPPHGDKAEAAQAWVRFWEERYRTPDSALDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQVQQWPVFDLERSVLRMVLGSVPAGPTIPEQQRQEIAAWLELTRKNVGWGIGWGKREAVWEMLVAWQREGVLERCGGSLAPDLARALEWEQEGEVLQAMAGYVPGLAEVRAHPEAMRAIIARWEALSRNDDWRIRRTAWVARWNFLRAGVLTAEEQTRFGADYMEAIGAENDWDVLLALAQITPPGTFPLATWAGRLSDQNDRRRLAARLAIHGWLVEVMEGASGEWRVASGSSLLATRYSRLATHRRQVRQALRRAGQEGTDAGTVAPFVDLPPEVWTDFRRLREIETALAAGQMPPPPDAAAENRATPRAVPARLPEAHPRRGPPGITDRTAGRTAGSEPPARHPFPEVIRHE
Ga0308413_002835_8348_8572	F009196	N/A	VLPDFRRLREIETALAAGQMPPPDAAAKNRATPRAVLARLPEAHPQMNPPGNTNRAAGAEPPVRHPFPETIRHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_002835

Overview

Ecosystem & Geography

Associated Families

Sequences