NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_002896

Scaffold Ga0308413_002896


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_002896 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8474
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002372Metagenome / Metatranscriptome566Y
F007172Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_002896_2_220F007172AGGAGGMNTLERRTFAAALRAAKQSAYCRTVGGFVIARLSDGSIDWFPLGQPPNRNGEADRGAVILGRWRWNYKRWSRM
Ga0308413_002896_3517_3870F000855AGGAGMDWLEDFWSKVVGWWDHASANIYNGIVAFVNSLVEIWNGWMDALLHPAQAMPSIPALRFIVDWLGGIVDYTRLMYMLVDYIAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308413_002896_3873_4037F001381GAGMHYVVATLYVLCWLALAAGAALVLPRWALPAVLVQLAAAYVMVRSWLTAACGDD
Ga0308413_002896_4234_4686F000642GGAGMQEMSVALALCAVGAAIWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRVAGVVLPAAFAYFTWAQVASLQSLVAQILALVGK
Ga0308413_002896_7431_7745F002372AGGGGGMPTRREDMLWQIVHRKSSHLRALLDSLDLVDIGVMYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSGAEGV
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