Basic Information | |
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Taxon OID | 3300033886 Open in IMG/M |
Scaffold ID | Ga0308413_002896 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8474 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000642 | Metagenome / Metatranscriptome | 965 | Y |
F000855 | Metagenome / Metatranscriptome | 859 | Y |
F001381 | Metagenome / Metatranscriptome | 709 | Y |
F002372 | Metagenome / Metatranscriptome | 566 | Y |
F007172 | Metagenome / Metatranscriptome | 356 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308413_002896_2_220 | F007172 | AGGAGG | MNTLERRTFAAALRAAKQSAYCRTVGGFVIARLSDGSIDWFPLGQPPNRNGEADRGAVILGRWRWNYKRWSRM |
Ga0308413_002896_3517_3870 | F000855 | AGGAG | MDWLEDFWSKVVGWWDHASANIYNGIVAFVNSLVEIWNGWMDALLHPAQAMPSIPALRFIVDWLGGIVDYTRLMYMLVDYIAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS |
Ga0308413_002896_3873_4037 | F001381 | GAG | MHYVVATLYVLCWLALAAGAALVLPRWALPAVLVQLAAAYVMVRSWLTAACGDD |
Ga0308413_002896_4234_4686 | F000642 | GGAG | MQEMSVALALCAVGAAIWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRVAGVVLPAAFAYFTWAQVASLQSLVAQILALVGK |
Ga0308413_002896_7431_7745 | F002372 | AGGGGG | MPTRREDMLWQIVHRKSSHLRALLDSLDLVDIGVMYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSGAEGV |
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