NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_011859

Scaffold Ga0308413_011859


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_011859 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3386
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_011859_1789_2079F012676N/AMALESPALVTDRVKENDMNSIKIAAGWDGNPKNLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVCDERRFTQLIPILRKYGVHGIHEWTYDIHP
Ga0308413_011859_2040_2264F007172AGGAGGMNTLERRTFAAALRAAKRDAYCRAVGGFVIVRMSDGSIDWFPAGQPPHQGGEEDRGAVILGKWRWNHRRWSRIA
Ga0308413_011859_263_679F015735GAGGMVVYHHWSVEWHPRSDPPYGLPRVVCIARRAVVDPFSGPGPFPPDIDRALCYWNRIASGGARDHGAGYEVVWRLSVVADDAGVDAPPHGAWSGDPTYRARRRLLRWVMRSQCPLFADHFAVEHFRDHPEYFGLLEPGA
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