NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_013411

Scaffold Ga0308413_013411


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_013411 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3108
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F031513Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_013411_1083_1391F004024AGGAGGMNSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYGRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308413_013411_2725_3003F002372N/AVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSMGGAEGV
Ga0308413_013411_362_583F002978GAGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPSPLPDSPAPGA
Ga0308413_013411_5_355F031513N/ALLYDDVGGWRVLAASYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVASLQSLVAQILAFVGK
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Institute for Fundamental Biomedical Research
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