NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_029963

Scaffold Ga0308413_029963


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_029963 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1746
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_029963_1110_1343F008135AGGAGMNDPRTERVLTEAGASIARVLDARQRHAVALAIEVCWYIVVAALPPDGSVTFGDVVRLLRWFARGFNEGVEVDDGDE
Ga0308413_029963_1363_1608F002795N/AMVAAYREFVSRRDGRLFRIITVFGDLVVGEAVLCAVDGYDVFVDTPGYTRGEMVELPARLQFLRDGSGRPVIRLYVDEGVR
Ga0308413_029963_1608_1745F059548AGGGGGMPTRREDVLWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIV
Ga0308413_029963_753_1091F002229N/AMEVDMVTLLTLDGVEDVDYVPSDAEVRASLDDRALYGMVLGGVTWMRLVSGAGWWTIVCGRRVTAMVAPVGWCWVADGLGARGYWTPSLACIPAEVRALCGDGCADDEDEEE
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