NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_000045

Scaffold Ga0334790_000045


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_000045 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131410
Total Scaffold Genes133 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (60.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001107Metagenome / Metatranscriptome776Y
F003428Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_000045_110727_111029F001107N/AVRGWAQFPGRALHALAAAALPAMFLLRSTREEIYNILWGLVFGFATLNILSLGARRFEQEKSGLSFGEILAVLVVLVSIVLLGWEMLYVFHILPIQLTPR
Ga0334790_000045_117469_117693F003428N/AMQSECAKYKELKDREDRAHATWTSFLYRNEHKPKLSDKAKRKHQKEEMEAYQQAHKARLAHAKTCSICKEISAN

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