NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_000173

Scaffold Ga0334790_000173


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_000173 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68132
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (68.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007078Metagenome / Metatranscriptome358Y
F012485Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_000173_64004_64594F012485GAGGMSNSELNPEWVLSNSRQLENNPELIEIARRLWPRVRAHARKQLAHQNSDDSETLAAEVWESVLRSVSKTLARHHETTSTVLNLESYLFGAFLHRFNRALKRERKRQEIIEPLASTRELEQLPGARDWKSADGMERSLQVQEVMDSMDTWTRRVFAARLYGYTWKEIAELHELSESKAKLRFRYALRRLTARLGYGK
Ga0334790_000173_66422_67402F007078AGGVKKSKRESVRDSTARLQRAAHERADDEARRIPWHRLLDTQNQYIDWQEFYLWVRSILEVEDRIPDWLVEVLNARVPGFIETERALSPKAAKTRPLILRLEDWIEDHVFGFAKQEGSFFASTYYAVRDPRYQRAEVCWSECTEKWKKAKPAHYPSFEEWKGMAAQCDETAHLTARERKARASAKLVHPDRLTEAATRYMDCEALAYWARQALERGSEPPAEVVRELKRRCPGYLDSGFKARAKESRGGAQDWQHMMLWIANHYFQDAKTEGWFEAVLIQVRSHPRAIRTMEFSDYCSEIWGSELPSPYPPFEDWRRDADSYVELTVN
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