Scaffold Ga0334790_003533

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334790_003533

Scaffold Ga0334790_003533

Overview

Basic Information
Taxon OID	3300033887 Open in IMG/M
Scaffold ID	Ga0334790_003533 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10994
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (53.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F020406	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_003533_1294_1578	F000065	N/A	MINNPIPKLRKAPQPPLSYSGATPDSDRAKRPSLSAPSATDQELTPGDRVEGLGNFGKPTGEFGTVERTNEDDAVVKWDDDGRMRLHQPSLKKI
Ga0334790_003533_914_1222	F020406	N/A	MGEAVYRLLFSEFDGMTDRIPIEALFGLVFAWLATKFVGGVYRDRKERSARLTFIWARNHQIRDALEGITPLAHPAKNQQSIRVIREEVDRIEWALKEILPR

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