NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_003788

Scaffold Ga0334790_003788


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_003788 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10475
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028922Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_003788_830_1582F028922AGGAGGMSPLVRRSILKTFLIVVSCTLAVVVYGPLAWAQRAAGGGVQIAAPPMRHVPISSAPSIHAPLYHPPISSSRSGFAPSTGGLRTGGFRPPRRPIRPFPSVLIVYESPFLFGQPFWGLNSCWATCDLLLPWTLGYNTVSSPGPTNYVAEAYAAPEYDYGEERPELPQLFLKDGTILNVTDYWLVDDQLHFTMIEQDGAKPVEHLIPFDALDLQTTVDANTRRGFHFMLRNEPVEQYLRDHPEGAPAGVSPRQ
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