NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_020864

Scaffold Ga0334790_020864


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_020864 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2951
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007331Metagenome / Metatranscriptome353Y
F017215Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_020864_1114_1275F007331GAGMSTLADVRAAEKKAQEVVDALKKAGAQDPNHLCTELKNATDDYPRAVRELNSN
Ga0334790_020864_1334_1495F017215GGAGGMSEKRTKADKAQREADLLDKRSSHRPPQNQGKKPREDFNQAAVRIVEEAAEKH

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