NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_021205

Scaffold Ga0334790_021205


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_021205 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2917
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001851Metagenome / Metatranscriptome626Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_021205_2483_2698F001851AGGAGGMNATSFSFGLLIVLLAILLLHRMHKLKPQIAGYGSQTMCPSCGLITSRLKACCLECGKSLTDASVIPILEK
Ga0334790_021205_2749_2916F000042GAGMKNTKFVVKLNRGGNLVPEFVQRIDRTPIQMTTNRKLALVMGRFTAEDAIKSFQNS

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