NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_168297

Scaffold Ga0334790_168297


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_168297 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043194Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_168297_3_611F043194N/AMHEQAVMLTRPKKVPITSETLREDVAQRLQKAGLVLERPSSFPVTAKLDLTEAMRQGSQIAFEKQSVVRLDQLLGEIVRLAPGAVSNEALAAQLRDDRRFLVRRMGGNEMVTTRQILGEEKTLLMSVAYGMGEHEPLQKAYVAPASLVATPQRIDELVVQARLRGEQLTPAQAEKWLNQFAAIHRYVCTSQDQFVNIRGGAGV
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