NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_234518

Scaffold Ga0334790_234518


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_234518 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F104334Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_234518_1_243F104334GAGGMARNKESLLNRILRRGADAGVLVSAVALILVEAGYVAWLERLPALPSPAHPAGFLDLPPWYEHPRVEVTLLLTVLGGVIAW
Ga0334790_234518_249_512F006594N/AMHSKIPLEDSAIQTPSATRIVEGFRARFDKACDVGVWKRLSNAVLEPANRFDVKTRRQLRQEAIILGTLVLTALGLAVYFNLIAVAR

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