NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334792_001030

Scaffold Ga0334792_001030


Overview

Basic Information
Taxon OID3300033888 Open in IMG/M
Scaffold IDGa0334792_001030 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17477
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F017589Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0334792_001030_12649_13107F000451N/AMARFQTIIKHARFVFSPYTATEMQGFAQVLADSIRARIQNGQNIYDQAAAPLKPGPSGRRGYPDYKSARGLQPIRDWTWSGHTLRCIKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPHDRQAVLAAFQARPFVMLKAA
Ga0334792_001030_17230_17475F017589N/AMPASLCTAFTELREYLQLQNQYHDGTVQRSQLAQTSRRTFRLSKRLSASVLSALYNFWVYQNAGLTPFAFYNPFDVASGQQI
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