NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334792_118274

Scaffold Ga0334792_118274


Overview

Basic Information
Taxon OID3300033888 Open in IMG/M
Scaffold IDGa0334792_118274 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F022573Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0334792_118274_2_313F000335N/AMPASLCTAFTELRESAQLQNQYHDGTIHRSQLAQTSRRTFRISKRLSASVLSALYSFWVSQTAGLTPFAFYNPFDVAPGQQIGSNYDSTGNNTQGRVTVVFRGN
Ga0334792_118274_359_676F022573GGAVEQGGKLYQQASYQDGQAHAYASNIPTLGGIAAGTYPTPGGPNTTGGTGATYLSLSISGNDAANFMTGQYVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA
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