NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326769_011184

Scaffold Ga0326769_011184


Overview

Basic Information
Taxon OID3300033894 Open in IMG/M
Scaffold IDGa0326769_011184 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2101
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0326769_011184_1498_1863F051572GAGGMSRGRAYGGPFAEVQTFADVVLKGGCKKSPQFLDAHLELCVLAALVKAVPAGAMVKLRPELARRLVEELAAAAGQDRERIRSALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKEL
Ga0326769_011184_832_1440F038745N/AMNRTVAVVCGELMQASLALSAYYPLCLDGQSCAYAEAVERLIRRAASARGAEELLEAINGRVRLEELGLPDPALEVLAEELGPEPRWLDALAASFFRLYLSLHGRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELEPDRLYTEEEARKALEVEERIFKRLWRRALAFHRGAFRRGEKAYGFQLILAALSLMAAPPRSV
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