NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000123

Scaffold Ga0314861_0000123


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000123 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130233
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (70.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001167Metagenome / Metatranscriptome758Y
F051657Metagenome143Y
F088108Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000123_31397_31615F001167GGAGGMFQFSDLVRGGEMVREVKQKFPETGEVFEKFGLRPSCFDCSIEMAARKVGAPFDDLMVEVNKAIYKSRGVTA
Ga0314861_0000123_65199_65654F088108N/AMRAFEAFLRELAADFIKQEVRRANDPLPDEEPPAPTPEQIRETPLFMVIRRLLRHADEDFTRPAFDAMTARARRDTRPYWEFARCRRARNMGVAISEINLPDDAWELEEKFWMRVDAAITEALKGRRRRPSKKRRGRAGYQAETPPCASSA
Ga0314861_0000123_76049_76261F051657N/AMDSANTDPELRQWLCWAFESGKVPMFVRTVAEAALIACLPDYELLRPVLLELKRRYPEDLAHAVAKTGTA
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