Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000137 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000137 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	124327
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (75.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

124327

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

75 (75.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F057060	Metagenome	136	Y
F076760	Metagenome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000137_1_288	F076760	AGGAG	MSLAARYKLFWAACIAALCGLAFWKNSKSYPGKSKLWRLGKSAVDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIV
Ga0314861_0000137_2188_2511	F002761	AGGA	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELAKFVGFKRAKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNVMMVIFVVPIWCRLAKLEGL
Ga0314861_0000137_2508_2807	F025427	AGGAG	MQPGELEKLLVSLETCPIQKKGLVLRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTVWALNWEREMTAYLDATFRKWKKDNDVQCDFDGWLDEKGNDRV
Ga0314861_0000137_2794_2994	F027079	AGGAGG	VIKAFLNLCLIFFLDMLAYMIAFVAAAVVAWAAVCGARWIFAVVQNATTALRRRWRKKEMHAHATW
Ga0314861_0000137_2991_3311	F016632	GGA	LETFALAEIGSTIGFLVNWRNKVLKAKVNFFRQPNNRPSPFDKVLRGKVGRAVTRQDCLRLQLADGLVNLIRKLVQYEAFRQVVRGLALGHSPMRQALRKKGGRPW
Ga0314861_0000137_3335_3793	F003859	AGGAG	MNELNAQKGTKSDGVRLTDYLLPVTSLYKSIKLSWQWRRLKWAVASASEAAQGHEANGVRPGSQEFKTLHNEVTKKVQEYSHESGDPIDTLKAKLPALCAMERLANPDPAAPQSKLGMTLGIIIAAVLGSVGIGALIGLGTGMAHWIAHLFA
Ga0314861_0000137_3957_4421	F028392	AGCAG	MFKGFEYQEVNSLEGELAMPNTIGSIRLPEALRNGNSALVKLAGKIDSFSLVLQCTPECQLKRQIEKEYHAMVFATRKEVRRYCPRYRYFPGEGILDFSTDCASGQLEPGDLGTPPQPKRGRLCHECCFFLGEPEEQLTETTVGRIPKDLTPQA
Ga0314861_0000137_467_655	F007120	AGGAGG	MKKLIIVVSVACAVVAYYFGLRYFSGQDLGFTRARKYVRNLAKSLLHTEATAAQEAGAAPAA
Ga0314861_0000137_4833_7949	F057060	AGGAGG	MPSHQELYFTPDINKPRQKWSVLEDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHYAAKAGIEYSRISLGRQSDSFDLALAIVQSGLGLEIPGDGTWYPVIPWVRDDGFCAVLMRKPIPYKEACHLFGFDIPTAKPSVPKRIKRHLARGRTALFGREAEVRQLNEYDCVHRVTLADGVTSFDTAVYDPGPRWPEAWTSGGALASRRGGALLTGHPVQIGDLIQITGALPSGQIKAHCLVWDVDYDLVVFDIKKELRAWNGDAYFSVLNELHASPANLDVQTASNLDLAKVRDQKLIQFLSQEFACDVFELMRDDERVKEEIGFYNPDGWVDEEGNPVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQTESPQNSDPDRFRIRFREPEDLMTVQPQELAGAGVRRYIFPEPFVFDRQGYPQWDRSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRKLQHFAEIDRGAVMFVHLGFAASPDGTPGLGKTFNGADFDDSVLALLDPAIVAHWKTLKDYPQVVATPTQAMVIDDGDALFDRHPEVERYDDEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRENIIAQLRAMEPNSKVLDAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFEGQGRIPRHRLGSYNEPIAVTTAMDVAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRGKRIANEQEAGLAAYLFAEEDVHNRIKASGTYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVIVEDTLVRIVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPARQAATVALPAVNGFEQRLKDITLKQQDRQKIEAELKLFHAQVGQRVTVKPVTYHNPKTRQDEPAAEVFLEGNAEPLCWIAREHLSAVTRELTGILVSNGKYSLTAICTLPN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000137

Overview

Ecosystem & Geography

Associated Families

Sequences