 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000297 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 85483 |
| Total Scaffold Genes | 77 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (68.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001364 | Metagenome / Metatranscriptome | 713 | Y |
| F008739 | Metagenome / Metatranscriptome | 328 | Y |
| F064326 | Metagenome / Metatranscriptome | 128 | Y |
| F074294 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000297_11951_12346 | F008739 | AGGAG | MKMRQLVPIVLCLTIVFAAAFAEGEGKKPKPGPLTGTWECTAHGGVQGDMPFTLYLEQTKGTLTGSVSSPIGGTEISAGTVKKNEIEIHIDSPQGSYQLTGRLKKGELSGKWSSDTENGTWEGKKQASGGK |
| Ga0314861_0000297_13611_13754 | F001364 | AGGAGG | MLGSLLFIACVVLQFHYHDSIPWYIWLAAVIALCVSFSEPAMRLKKE |
| Ga0314861_0000297_19454_20218 | F074294 | GGA | LTARELAARRANLEKARAAPRDAYRPTEKRLQASRANLEKAIAARRRPGGNASARLNALKHGLFAKQTLAESVDRLAEDKEEFAQHLQQFERVFVPGDEEEKRIVRRLAETVWRRLRLFRAQACREKEKLQRMFAEAPAAAQLSLDDTVARAEGLALALMQFEAFFRELNRLEAQVEFWVRRLIRKRSQGKLHWKGFRPRRDPLIERPEEDEQVDRFFEYWDALSADEQTAMRDEAREKLDAKMAESERAGGSR |
| Ga0314861_0000297_65929_66702 | F064326 | GGAG | MEQCRFIFWELLKILGVAFSSLLATKAVASWKAAEDHSLASRLARAKPWLYTVILALVGFGAWNLGYDIAAEVYYWASLSDAQNSRPSKAYLNSLQAVVLRPGIPRYWQALEEAKYNLGQFASVVDDWPAMQRFAGRGLDEVDSYRLALCLFFLGRYDEALRITKRLIAQNHLYMSPYILQGDVLNAQRNYDEAQQTFLTALRILPTDQAAVEGLAHAYFLEGNRQQALKVLEDTSKLPFPIEAQKRFEALKGLYGQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |