NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000323

Scaffold Ga0314861_0000323


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000323 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81552
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011280Metagenome / Metatranscriptome292Y
F011725Metagenome / Metatranscriptome287Y
F094768Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000323_18813_19001F011280AGGCGGMMKFEEAGRAVDREVAKLVDFLDKKMKPATRQEMANLLRRASRHLAKLARSLEKDEPGSSGQ
Ga0314861_0000323_48826_49332F094768N/ALVLALIVLASGIAVWTGLRFLSHNLRLQVEEGRGGKKAVSINIPGGKLGSIEVQHDVNEDSLSLPIYPGATRVKDKDSAAVNLGFGGEAGVHILAVKFETTDSMENVKAFYKARLGSEVSKFTEEGSDGKTTFEIKTGNQEKVVALEGAGSKTLIQLVRVSFGKNESN
Ga0314861_0000323_79381_80247F011725AGGCGGMVYATKMHTKAVVHSEPPELKDFLPPLPTDFTVQQQNTVTVKGVHSDGGADIENHFDKFEFQSDLAERVPGDMRDPAVKAQQEISEHVAGQDIVAHYDRSGRLLEFEGGEGLFEQLDLAYREPLRQALRFFLEQVGGETLYPDHPVKPGQTWKRKLDSQASTAYPYKVEGENTLRYVGKTKVGGVKAAVVECSFVNVVRPALGVLGKAEPLAQLQSHGLSVDMRIDGQGQGRVLLALDDGRVLQNRATIHQTLSARLGNSAPLPFTKSQPLKLEVQSDSEIDVVGVGQ
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