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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000333 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 80291 |
| Total Scaffold Genes | 82 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (63.41%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003490 | Metagenome / Metatranscriptome | 483 | Y |
| F007097 | Metagenome / Metatranscriptome | 357 | Y |
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F016487 | Metagenome | 246 | Y |
| F021037 | Metagenome / Metatranscriptome | 220 | Y |
| F042698 | Metagenome | 157 | Y |
| F100220 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000333_12912_13229 | F003490 | N/A | MPVSPRGLIMDTMVVLFAVWGLVTILFLGLVFYRSRITRRETDWIPLSGDAREEKAIEAQKVTEGRIRKFALPIRLLGILWVVMLLGIVGFWFYHGIMTPPPITK |
| Ga0314861_0000333_29424_29723 | F100220 | AGG | MTIYKYPFEQFAISLDFAADLGSGGGIASIAGVTAVNDLTKADSTEEVIAAEPSPGISGTAVTLTVMGGVAGETHTIAVQIVSAVGEQYQGEITLRVQE |
| Ga0314861_0000333_37488_37808 | F042698 | N/A | MADDDFGGTMSISVTSVSPDILVDNRGVMPDLVTLTIAGLTANASNAVPHGLPRTPKRVWFTGVGSGVNAPDCSLDTSTVAAGFDGTNIYIYTPASVTNVLAHVEY |
| Ga0314861_0000333_37901_38380 | F011724 | N/A | MGYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIEDRKARIRSAFVARNIDPDAMTLTSDHVSFLRALNRDGAIADLGDALQGNIALQPGEYSQAAARRKSFELQIKEIKEGLYDKIFAPVIAKTVEIEPLLGGIAGGETDRSTAFDRGENKAFSKNQTF |
| Ga0314861_0000333_38475_39029 | F008672 | GAG | MWTSYYQAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYASFAEYDLASLPVQQFPAILLAPNSVTFDEAANFTLHQTMQLTCQITVTHQDRNTLAEVAQDYVRAVRAVLDTLWESTPGDFLLTTLSLPSPPFPNGALSPGLASGKLMKLFADRHTFGEISAGAQSGFVMAPSMSVVVEIEET |
| Ga0314861_0000333_40067_40588 | F010661 | AGG | MAKTNNIATAADFRALAEASAFEEPRRVVLPKSGYGVLLRRPTKFYWALRRSAWPRELREKLDLVAVGVRPELTAEETLLLVREDQQMLNEAFVDPKPSLHPGSMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPEHPEGSGADGALVREDSERDVIPRSGPLAS |
| Ga0314861_0000333_42256_42444 | F016487 | N/A | MIQGNQAWTQALAQPQKQAYYVVEIPDFAIAIASFPASSPVALTAISGGYGVTLYGVGGYGT |
| Ga0314861_0000333_46982_47467 | F007097 | N/A | MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRGECQFVWMIYSNRSPAPGFVPGQAAPPAQSSSQAGQLYNFPGGWDVNDATGLVTLRTTYWQNGNEVVNNDGIVKVYAVCLRLSLNSAN |
| Ga0314861_0000333_52345_52728 | F021037 | N/A | VSEDKTMFRLYAASFGVSLAIFLATCAGSSVALARVGNAWSASQAMNFTVEGKVNTLGQNKLTLNTEENIIFHVRYDDKTEFKSDDGSPASSKDLRVGSRIKVEGDLTESGEIVAQRIELEKAPPKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |