NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000333

Scaffold Ga0314861_0000333


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000333 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80291
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (63.41%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003490Metagenome / Metatranscriptome483Y
F007097Metagenome / Metatranscriptome357Y
F008672Metagenome329Y
F010661Metagenome300Y
F011724Metagenome287Y
F016487Metagenome246Y
F021037Metagenome / Metatranscriptome220Y
F042698Metagenome157Y
F100220Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000333_12912_13229F003490N/AMPVSPRGLIMDTMVVLFAVWGLVTILFLGLVFYRSRITRRETDWIPLSGDAREEKAIEAQKVTEGRIRKFALPIRLLGILWVVMLLGIVGFWFYHGIMTPPPITK
Ga0314861_0000333_29424_29723F100220AGGMTIYKYPFEQFAISLDFAADLGSGGGIASIAGVTAVNDLTKADSTEEVIAAEPSPGISGTAVTLTVMGGVAGETHTIAVQIVSAVGEQYQGEITLRVQE
Ga0314861_0000333_37488_37808F042698N/AMADDDFGGTMSISVTSVSPDILVDNRGVMPDLVTLTIAGLTANASNAVPHGLPRTPKRVWFTGVGSGVNAPDCSLDTSTVAAGFDGTNIYIYTPASVTNVLAHVEY
Ga0314861_0000333_37901_38380F011724N/AMGYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIEDRKARIRSAFVARNIDPDAMTLTSDHVSFLRALNRDGAIADLGDALQGNIALQPGEYSQAAARRKSFELQIKEIKEGLYDKIFAPVIAKTVEIEPLLGGIAGGETDRSTAFDRGENKAFSKNQTF
Ga0314861_0000333_38475_39029F008672GAGMWTSYYQAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYASFAEYDLASLPVQQFPAILLAPNSVTFDEAANFTLHQTMQLTCQITVTHQDRNTLAEVAQDYVRAVRAVLDTLWESTPGDFLLTTLSLPSPPFPNGALSPGLASGKLMKLFADRHTFGEISAGAQSGFVMAPSMSVVVEIEET
Ga0314861_0000333_40067_40588F010661AGGMAKTNNIATAADFRALAEASAFEEPRRVVLPKSGYGVLLRRPTKFYWALRRSAWPRELREKLDLVAVGVRPELTAEETLLLVREDQQMLNEAFVDPKPSLHPGSMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPEHPEGSGADGALVREDSERDVIPRSGPLAS
Ga0314861_0000333_42256_42444F016487N/AMIQGNQAWTQALAQPQKQAYYVVEIPDFAIAIASFPASSPVALTAISGGYGVTLYGVGGYGT
Ga0314861_0000333_46982_47467F007097N/AMSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRGECQFVWMIYSNRSPAPGFVPGQAAPPAQSSSQAGQLYNFPGGWDVNDATGLVTLRTTYWQNGNEVVNNDGIVKVYAVCLRLSLNSAN
Ga0314861_0000333_52345_52728F021037N/AVSEDKTMFRLYAASFGVSLAIFLATCAGSSVALARVGNAWSASQAMNFTVEGKVNTLGQNKLTLNTEENIIFHVRYDDKTEFKSDDGSPASSKDLRVGSRIKVEGDLTESGEIVAQRIELEKAPPKK

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