Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000365 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 75691 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (72.31%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011725 | Metagenome / Metatranscriptome | 287 | Y |
F054512 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000365_34524_35552 | F011725 | AGGA | MHRLERQNLLPALARFRSVRLAAGLALLALWAPAPVRAWGGKVRLERRYQSGQKMVYATKMHTKAAIHSEPPGLQNFLPPLPTNLTMQQQNTVTVKAVHSDGSADIENHFDKFELQSDLAERAPANFHDPAVRAQQEISEHVAGQDIVAHFDCHGRLLGFEGGEGLFAQLDLAYREPLRQTLRFFLEQVAGNTLYPERPVKPGEAWKRKFDSPASAAYPYNVEGENTLRYVGKTKVGGVKAAVVEFSFVNVVRPAPQALGKAEPLAQLASHRLGVDMRIDSKGQGRVLLALDDGRVLQNHATIHQTLSARLESPVPLPFTKSQTLKLEVQSDSQMDVVGAGR |
Ga0314861_0000365_7570_8289 | F054512 | GGAG | MPVPNPPAEAAARTDTPAAALPRLQLSLLPLASSDVLSRTLKLPPPPAGATQVATGNARKPAPGALGTLPLPQLIEREAALAASLAELPPGQRLALPRLSIRVDAQWLEVLPQTKEELYFSVTRPQEDSEVLAYLPATHSFTLKRPLGPLWQIREAEQVPALAALRSAAARQLGVSPELVGLYTWHPPVLENALRMFVLARMEHLGLQLGPSDVVTVRFASGPDGCLMTLEPIRAPGSP |
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