NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000402

Scaffold Ga0314861_0000402


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000402 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71866
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (75.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002376Metagenome / Metatranscriptome566Y
F021497Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000402_20913_21056F021497GGAGMETEGKTPPAQEWKVRRVGTVTFAISKPKRKAQKLRQARLKNRRRAR
Ga0314861_0000402_63946_64878F002376GAGMQVLRKLGRFSLRSRFFLHLPHEWQWGLLKLVNFAQKPPREQLRIARCKLAGMDWYWKVHSPGNDRTAYIIGLFGSGRDYITQLMRQNIGERAKYLALELRLHSGPTSMIYSGHATIRYVSSDLYSPAVTSRILEAVRAGFADLIFLYRHPLDSLLTNWVFWRAYIRHNRLEVISRAYKNTDDLCADLEQNFLDFKAFAEGDPGFFAAAPGRRFLSLPEFVEETELYLQCATLALRLEDFIIDPLKEFSKIAKVMSVNLDSSRLHLAPPTTKPYRYLAVKEKVPRFRDFINGLDAETKRRIERIGYKVEG
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