Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000404 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000404 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	71651
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (62.07%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

71651

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (62.07%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000404_56468_56701	F019075	AGGAGG	MRYFQPERALIARESREERRRELDDILSQLPQRAARLPASPPLSLEAQFQMSVGKIREDVQRAKDVQTIHILRWLRS
Ga0314861_0000404_56875_59988	F057060	AGGAGG	MANHQELYFTPDIAKPHQKWSVLEDPERPGRRLIYRHYRQPGEKPDVRTSFGHSELSPVLEHYAARAGIEYSRLSLGRQTDSFGLALDLVQSSLGLDIEGTTWYPVIPWVRDEGFCAVLMREPIPFEEACHLFGFDIPAAKPSVPKRIKRHLATGRTALFGREAEVRQLNQYDCIHQVLLADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQMGDLIQITGALPSGQIKAHCLIWDVAYDLVVFDIKKELRACNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQYLSQEFACDVFELMKDDERAKEEIGFYNPEGWVDEEGNLMMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTVQPQELAGAGVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLHGRRLQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVATPTQVMVIDDGDALFDRHPEVDRYDDEYVMRMIIDARDGQMGIGYVVNAIVWFNLLWLNRRSILEQLRAMEPSTKVLDAIRWMEHDLPQSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLGNGNEPIAVTTAMDVAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFRLLYNRTREAKKAEFLKAGKDHRGKSVANEQEASLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVPDGILGGPHTLDGFLDMARAAGATRRYMPITWESERVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPAPQAATVALPAVNGFEQRLRDARLKQEDRQRIEAELKFFQAQVGQRVTVKPVTYHNPKTRQDEPAAQVFLQGKSEPLCWISRQHLSAVTRELSGVLVSNGKYSLTAICTLPN
Ga0314861_0000404_60180_60590	F028392	AGGAGG	MPNTIAAIRLPEALRDGNSALVKLAGKIDSFSLVLWRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFQGEGILDFSTDCASGQLETGDLGKPPQPKRGRLCQECCFFLGEPEVQVSETTVSKAPEALVPVA
Ga0314861_0000404_60754_61212	F003859	AGGAG	MDELNAQQGTRAEDVSASDYSLPGVSLYKSLKLGWHWRRLKWAVAAASEAAQGHEANGVRPGSQEFKTLYDQVAKKVQEFSHESGDSIDTLKANLPALCAIERLAHPDPVAAHTKLGLTLGIIIAAVLGSIGMGALIGLATGMAHWIAHLFA
Ga0314861_0000404_61224_61556	F016632	AGGAGG	LTGILELFVLVETGSAIGFLAGWRNKVLNAKINFFRPPDNRPSPFDKVLRSKVGRALTRQDRLRLKIADRLVNLIRKLVQYEAFRQVVRGLALAHSPLRQALRKKGGRPW
Ga0314861_0000404_61553_61756	F027079	AGGAGG	VIKAFLNLCLILFLDTLAYMVAIVAAAAVAWAAVCGARWIFAGFQKALMALCAGLRKERFEHAGEEV
Ga0314861_0000404_62061_62390	F002761	AGG	MTFTPSATSSFTAGAVFWSMVWAGLGKLDELARFVGFQRSRPRESALRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWCQLFKLESRLS
Ga0314861_0000404_62454_62642	F039911	AGGAG	MKYTIAVLLTVAAAAAGYFGLRRLTHKDLGFTPVKRYATKLAKTLIHTEATAAQEAGVAQAA
Ga0314861_0000404_62691_63086	F005112	AGGAG	MSLAAKYKLFWAACIVTLCGLAFWKNSKSYPGKPRLWRLGKSAIDTGLVLLLVLYAPALLLVYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLVTGQVVARMDRRNRKEAAEAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000404

Overview

Ecosystem & Geography

Associated Families

Sequences