Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0001359 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0001359 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32256
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (53.49%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

32256

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (53.49%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022134	Metagenome	215	Y
F039954	Metagenome	162	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0001359_1353_1646	F022134	GAG	VPTASAEKLKEAGERLTTGAVPVPVRLTVCVAGLALSVSVIEPLREPVAVGVNVTLIVQEALAATLEPQVLVWEKSPLAAMLVMLRVALPVLLRVRV
Ga0314861_0001359_1659_1952	F022134	GAGG	VPTACAGKVKEAGERLTTGAVPVPVRLTVWVVGLALSVMVIEPLREPATVGAKMTLIVQEALAATLVPQVLVWEKSPLALMLVMLRAALPVLLRARL
Ga0314861_0001359_1965_2144	F039954	AGG	MVIEPLREPATVGVKMTLIAQEALAARLEGQLLVWEKSPLALMLLRLRLALPVLLRVRL
Ga0314861_0001359_2268_2447	F039954	AGG	MVIEPLSEPATVGVKMTLIVQEALAARLEGQLLVWEKSPLAAMLLMLRAALPVSLRVRL
Ga0314861_0001359_2571_2792	F039954	N/A	VRLTVWVAGLALSVMVTTPVLVPAAVGLKVTLRVQLAPAATLEPQVLVWEKSPLTVMLVMLRAALPVSLRVRL
Ga0314861_0001359_2877_3110	F022134	N/A	VPVPERVAVWVAGLALSVMVIEPLREPAAVGVKVTLIAQEALGATLESQLLVWEKSPLAVMLVMLRVALPVLLRVTL
Ga0314861_0001359_4758_4937	F039954	AGG	MVIEPLSEPATVGVKMTLIVQEALAARLEGQLLVWEKSPLAAMLLMLRAALPVLLRVRL
Ga0314861_0001359_5067_5246	F039954	N/A	MVTAPVLVPVHVGLNVTLRVQLALAARLEPQVLVWEKSPLTMMLVMLRAALPVLLRVRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0001359

Overview

Ecosystem & Geography

Associated Families

Sequences