NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001411

Scaffold Ga0314861_0001411


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001411 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31376
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022134Metagenome215Y
F039954Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001411_30075_30254F039954N/AMVTAPVLVPVAVGLKVTLMVQLALAARLEPQVLVWEKSPLIVMLLTLRVGLPVFVSVTL
Ga0314861_0001411_30381_30560F039954N/AMVTAPVLVPVAVGLKVTLMVQLAPAAMLAPQVLVWEKSPLALMLVMLRVTLPVFLSVTL
Ga0314861_0001411_30687_30866F039954N/AMVTAPVLVPVAVGLKVTLREQLAPAAMLAPQVLVWEKSPLALMLVILRVALPVFLSVTL
Ga0314861_0001411_30879_31172F022134GAGVPTGCAEKVKETGERLIPGALPVPVRAMVSGSPSALSVMVTAPLRVPAAVGVKVTLMVQLAPAVTLPPQVLVWEKSPLAVMLVMLRPALPVFVSVTL
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