Basic Information | |
---|---|
Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0001469 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 30339 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (69.70%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008739 | Metagenome / Metatranscriptome | 328 | Y |
F074294 | Metagenome | 119 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0314861_0001469_12206_12601 | F008739 | AGGAG | MKMRQMVPIVLCLTIGFAAAFAQGEGKKPKPGPLTGTWECTAHGGSQGDIPFTLYLEQTKDTLTGSVSSPMGGTQISAGTVKKNDIEIHIDTPQGNYQLTGRLKKGELSGKWSSETENGTWEGKKQASGGK |
Ga0314861_0001469_5794_6531 | F074294 | GGA | LTARELAARRANLEKARAAPRDAYRPTEKRLETSRVNLARAIAARRRPEGNASARLNALKHGLYAKQRLAESVDRLAEDKQEFARHLHQFERVFVPGDEEEKRIVRRLAHTVWRRLRFFGAQTCWEKEKLQKMCVGAPSPAQLSVQETVFRAEGLAQALMQFDAFFCELNRLESQVEHWLRKLILKRSKGELRWKGFRPRRDPLMEPPEAEQQVERFVEYWDLLSPEEQSALREEACKQVDARAR |
⦗Top⦘ |