NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0002211

Scaffold Ga0314861_0002211


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0002211 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21388
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001364Metagenome / Metatranscriptome713Y
F074289Metagenome / Metatranscriptome119N
F074294Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0002211_12121_12369F074289GGGGGMPFTLYLEQTRDTLTGSVSSPMGGTEISAGTVKKNDIEIHIDTPQGNYQLTGKLKKGELSGKWSSDTENGVWEGKRQTAGGK
Ga0314861_0002211_5877_6641F074294GGALTVRELAARRANLEKACAAPRRAYRRTEKQLQASRANLTKAIAARRRPEGNASARLNALKHGLYAKRTLAESVDRLAEDKEEFTRHLHQFERVFAPGDEEEKRIVRRLAGTVWRRLRFFRAQACWEKEKLQRMFAEAPGPAQLGLDDTVARAEGLSLALMQFDAFFRTLNKLEAQVEFWLRKLIRKRSQGKLRWKGFRPRRDPLLERPEEEEQIDRFVEIWDAMSLEEQAALREEARKKVDAKLADTTTRQSRG
Ga0314861_0002211_8539_8697F001364GAGMIGGDMFGVLLFIACVVLQFHYHDSIPWYIWVAAVIGLCVSWGEPAMKFKKE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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