NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0003399

Scaffold Ga0314861_0003399


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0003399 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15176
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010661Metagenome300Y
F021037Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0003399_125_646F010661N/AMTRTNDIATAAEFRQLAEAASWTDPERVRLPKSGLGAILRRPTKFYWALRRSAWPRELREKLDLVGVGVRPELTAEETLLLVREDRQMLDEAFVNPKPSLAPGTTQFDPNWLPKEDTEFILKYLRGQVLANGQDLDTFPGSEPGHLEGSSGNGTLVRENSERDAIPRGGPLAS
Ga0314861_0003399_8303_8659F021037GAGGMFRLRSVSLYVPVMILLACLAWRSGSGARAAKTLQDSQAMNFTLEGKINSIDHNKLTVHTEENIIFHVSYNDKTEFKSDDGSPASSKDLRVGLKIHVDGDLTESGEIVAQKIVLEKKK
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