Scaffold Ga0314861_0005168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0005168

Scaffold Ga0314861_0005168

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0005168 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11038
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F016487	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0005168_5501_5986	F007097	N/A	MSQLVLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTIPTPVDPDDGYAYSRGECQFVWMIYSNRAPAPGFVPGQAAPPAQSSSQAGPLYNFPGGWDVNDATGLVTLRTTYFPSGNEVVNNDGIIKVYAVCLRLSLNSAN
Ga0314861_0005168_6_161	F016487	N/A	LAQSQKQAYYTVEIPDFAIAIASFPALSAIAQAAPTGGYGVTLYGVGGYGT

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