NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314861_0005970

Scaffold Ga0314861_0005970


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0005970 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9937
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022134Metagenome215Y
F039954Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0005970_1147_1326F039954N/AMVTAPVLPPVAVGLKVTLRVQLALAAMLEPQVLVWEKSPLTVMLVTLRAALPVLLSVTL
Ga0314861_0005970_220_483F022134N/AVGAKLAVAAVPPVPVKLTVWVAGLALSVTVKVPALAPVAVGLKVTLRVQLAPAATLEPQVLVWEKSPLTVTLVTLRAALPVLLSVTL
Ga0314861_0005970_529_774F039954GAGGVAAVPPVPVKLTVWVAGLALSVTVKVPALAPVAVGLKVTLILQLAPAATLEPQVLVWEKSPLAATLVMLRAALPVLLSVTL
Ga0314861_0005970_838_1101F022134N/AVGARLGVAAVPPVPVKLTVWVAGLALSVTVKAPALAPVAVGLKVTLRVQLAPAAMLEPQVLVWEKSPLTVMLVTLRAALPVLLSVTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.