NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0025710

Scaffold Ga0314861_0025710


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0025710 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3600
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F011724Metagenome287Y
F062368Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0025710_1059_1346F062368GGAGGMAVSVSQVEQFIEVTTAGPYIKNAKLIVTGLTASGNNTVPHGLTDGKGNAVTPLTVSLEPTSNNNFYEYQPADSTNIYVGVGAGAGTSCNIYVEY
Ga0314861_0025710_1454_1930F011724AGGAGMSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARAIDPDAMALTPDQANFLRALNRDGAIADLGDALEGNVSLQPGEASQASERRKSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAQDRAENKAFSKDQVF
Ga0314861_0025710_2039_2608F008672N/AMFRIKMWTSYYNAGLSKQVVRQLLAIINRDIQAALDFVSGVPGSYAPFVEYDLALLPVQQFPAILLTPDTAAFDEGADFSLHQTIRLSCVVALTHQDRNTLSEITQDYVRAVRGVLDTLWESSPGDFLLTNLPLPSPPFPAGALSPGLASGKLMKIFVDRHTFEEIRAGAQSGFVMAATMSVIVEIEET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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