NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0025939

Scaffold Ga0314861_0025939


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0025939 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3580
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0025939_1406_1864F003859AGGAGMSELNSQQEATCHGTSVAACFLPVTGFYKAVKLGWQWRRLKWAVAAASEAAQGHEANGVRPGSQEFKTLYNEVAKKVQEYSHESGDPIDTLKAKLPALCAIERLANPEPVVPQNRLALTLGVITAAVLGSIGIGALIGLGTGMAHWIAHLFA
Ga0314861_0025939_2830_3219F028392AGGAGGMPNTIAVVHLPEALRNGNSALVKLAGKIDSFSLLLQRTPECQLKRQIEKEYHAMVFTTRKEVRRYCPRYRYFQGEGILDFSTDCASGQPEPGDLGKPPQPKRGRLCRECCFFLGEPEEQFPETSVCGIS
Ga0314861_0025939_314_643F002761AGGTGGMVFTPSSTGSFTAGAVFWSMVWAGLGKLNELARFVGFKRSRPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWCRLSRLESRLS
Ga0314861_0025939_865_1065F027079AGGAGGVIKSFLNLCLILFLDMLAYIVAIVAAAAVMWAALCGARWIVASLRNAAVALQTRQRKKERYAHAPR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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