NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0084299

Scaffold Ga0314861_0084299


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0084299 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1657
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0084299_102_527F028392GGAMEDLPMPNTIAVVHLPEALRDGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFAGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEEQFPGTTVSGIPKDLTPVA
Ga0314861_0084299_1160_1492F016632AGGAGGLTGILETFALVEVGSAIGFLAGWRNKVLNAKVNFFRPPDNRPSPFDKVLRGKAGRAVTRQDRLRLKLADRLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGGAW
Ga0314861_0084299_1489_1656F027079AGGAGGMIKAFLNLCLILFLDTLAYMIAIVAAAAVAWAAVCGARWIFAGFQKAVMALRAGLR
Ga0314861_0084299_690_1148F003859AGGAGMDELNAQQGTRAEDVSASDYSLPRVSLYRSLKFGWHWRRLRWAVASASEAAQGHEANGVRPGSQEFKTLYEEVAKKVQEFSHESGNPIDTLKANLPALCAIERLAHPDPVAPHTKLGLMLGIIIAAVLGSIGMGALIGLATGMAHWIAHLFA
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